PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1387
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 253aa    MW: 28758.4 Da    PI: 7.888
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1387genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.86.1e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT  Ed llv++++ +  g+W++ + + g+ R++k+c++rw +yl
      Gh_D08G1387 14 RGQWTSREDTLLVNYIQAHDEGHWRSLPMKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP

2Myb_DNA-binding52.41.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
      Gh_D08G1387  67 RGNISPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      7899******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.717961IPR017930Myb domain
SuperFamilySSF466895.35E-2811108IPR009057Homeodomain-like
SMARTSM007172.5E-91363IPR001005SANT/Myb domain
PfamPF002492.6E-111461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-201568IPR009057Homeodomain-like
CDDcd001671.39E-71761No hitNo description
PROSITE profilePS5129426.37562116IPR017930Myb domain
SMARTSM007174.3E-1666114IPR001005SANT/Myb domain
PfamPF002493.3E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2669116IPR009057Homeodomain-like
CDDcd001676.27E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRSPCCSKV GLHRGQWTSR EDTLLVNYIQ AHDEGHWRSL PMKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI SPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLLSQG  120
IDPNTHQTLP KPVVQQVKKK NNNRGSNNKQ NPKKANATHE PAVIPKLHLP KPTSSSQRGE  180
GALDTEAIQC PWSEYVNDGE NGTGLLSHLE CHSGLPASED ENSLEKLYEE YLQLLRTDED  240
QLQLDDFPES FLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-23121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475067.11e-180PREDICTED: myb-related protein 308-like
SwissprotQ9S9K96e-70MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A0D2PCA71e-180A0A0D2PCA7_G
STRINGPOPTR_0014s09630.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-69myb domain protein 3